Publications

Publications from the Koster lab (since 2006). For full publication lists of individual lab members, see their personal people pages.

2018

Quinn PM, Mulder AA, Henrique Alves C, Desrosiers M, Vries SI, Klooster J, Dalkara D, Koster AJ, Jost CR, Wijnholds J. Loss of CRB2 in Müller glial cells modifies a CRB1-associated retinitis pigmentosa phenotype into a Leber congenital amaurosis phenotype. Hum Mol Genet. 2018 Sep 19. doi: 10.1093/hmg/ddy337

 

Berkeley RA, Steele LP, Mulder AA, van den Wollenberg DJM, Kottke TJ, Thompson J, Coffey M, Hoeben RC, Vile RG, Melcher A, Ilett EJ. Antibody-Neutralized Reovirus Is Effective in Oncolytic Virotherapy. Cancer Immunol Res. 2018 Oct;6(10):1161-1173. doi: 10.1158/2326-6066

 

Schillemans M, Karampini E, van den Eshof B, Gangaev A, Hofman M, van Breevoort D, Meems H, Janssen H, Mulder AA, Jost CR, Escher JC, Adam R, Carter T, Koster AJ, van den Biggelaar M, Voorberg J, Bierings R. The Weibel-Palade Body Localized SNARE (Soluble NSF Attachment Protein Receptor) Syntaxin-3 Modulates Von Willebrand Factor Secretion From Endothelial Cells. Arterioscler Thromb Vasc Biol. 2018 Jun 7. doi: 10.1161/ATVBAHA.117.310701.

 

van Elsland DM, Pujals S, Bakkum TS, Bos E, Oikonomeas-Koppasis N, Berlin I, Neefjes JJC, Meijer AH, Koster AJ, Albertazzi L, van Kasteren SI. Ultrastructural Imaging of Salmonella-Host Interactions Using Super-Resolution Correlative Light-Electron Microscopy of Bioorthogonal Pathogens. Chembiochem. 2018 Jun 5. doi: 10.1002/cbic.201800230.

 

Melia CE, van der Schaar HM, de Jong AWM, Lyoo HR, Snijder EJ, Koster AJ, van Kuppeveld FJM, Bárcena M. The Origin, Dynamic Morphology, and PI4P-Independent Formation of Encephalomyocarditis Virus Replication Organelles. MBio. 2018 Apr 17;9(2). pii: e00420-18. doi: 10.1128/mBio.00420-18.

 

Koning RI, Koster AJ, Sharp TH. Advances in cryo-electron tomography for biology and medicine. Ann Anat. 2018 Mar 8;217:82-96. doi:10.1016/j.aanat.2018.02.004

 

van den Berg CW, Ritsma L, Avramut MC, Wiersma LE, van den Berg BM, Leuning DG, Lievers E, Koning M, Vanslambrouck JM, Koster AJ, Howden SE, Takasato M, Little MH, Rabelink TJ.  Renal Subcapsular Transplantation of PSC-Derived Kidney Organoids Induces Neo-vasculogenesis and Significant Glomerular and Tubular Maturation In Vivo. Stem Cell Reports. 2018 Mar 13;10(3):751-765. doi: 10.1016/j.stemcr.2018.01.041.

 

Ugurlar D, Howes SC, de Kreuk BJ, Koning RI, de Jong RN, Beurskens FJ, Schuurman J, Koster AJ, Sharp TH, Parren PWHI, Gros P. Structures of C1-IgG1 provide insights into how danger pattern recognition activates complement. Science. 2018 Feb 16;359(6377):794-797. doi: 10.1126/science.aao4988.

 

Howes SC, Koning RI, Koster AJ. Correlative microscopy for structural microbiology. Curr Opin Microbiol. 2018 Jan 29;43:132-138. doi:10.1016/j.mib.2018.01.009. [Epub ahead of print]  PubMed PMID: 29414444.

 

Bulk M, Abdelmoula WM, Nabuurs RJA, van der Graaf LM, Mulders CWH, Mulder AA, Jost CR, Koster AJ, van Buchem MA, Natté R, Dijkstra J, van der Weerd L., "Postmortem MRI and histology demonstrate differential iron accumulation and cortical myelin organization in early- and late-onset Alzheimer's disease." (2018) Neurobiol Aging. 62, 231-242. 10.1016/j.neurobiolaging.2017.10.017.

 

de Breij A, Riool M, Cordfunke RA, Malanovic N, de Boer L, Koning RI, Ravensbergen E, Franken M, van der Heijde T, Boekema BK, Kwakman PHS, Kamp N, El Ghalbzouri A, Lohner K, Zaat SAJ, Drijfhout JW, Nibbering PH., "The antimicrobial peptide SAAP-148 combats drug-resistant bacteria and biofilms." (2018) Sci Transl Med. 10 (423). 10.1126/scitranslmed.aan4044.

 

2017

Xue, X., Wu, J., Ricklin, D., Forneris, F., Di Crescenzio, P., Schmidt, C.Q., Granneman, J., Sharp, T.H., Lambris, J.D. and Gros, P., "Regulator-Dependent Mechanisms of C3b Processing by Factor I Allow Differentiation of Immune Responses" (2017) Nat Struct Mol Biol, 24, 8, 643-651. 10.1038/nsmb.3427.

 

van de Sandt, C.E., Bárcena, M., Koster, A.J., Kasper, J., Kirkpatrick, C.J., Scott, D.P., de Vries, R.D., Herold, S., Rimmelzwaan, G.F., Kuiken, T. and Short, K.R., "Human CD8+ T Cells Damage Noninfected Epithelial Cells During Influenza Virus Infection in Vitro" (2017) Am J Respir Cell Mol Biol, 57, 5, 536-546. 10.1165/rcmb.2016-0377OC.

 

Tuijtel, M.W., Mulder, A.A., Posthuma, C.C., van der Hoeven, B., Koster, A.J., Bárcena, M., Faas, F.G.A. and Sharp, T.H., "Inducing Fluorescence of Uranyl Acetate as a Dual-Purpose Contrast Agent for Correlative Light-Electron Microscopy with Nanometre Precision" (2017) Sci Rep, 7, 1, 10442. 10.1038/s41598-017-10905-x.

 

Sharp, T.H., Faas, F.G., Koster, A.J. and Gros, P., "Imaging Complement by Phase-Plate Cryo-Electron Tomography from Initiation to Pore Formation" (2017) J Struct Biol, 197, 2, 155-162. 10.1016/j.jsb.2016.09.008.

 

Patwardhan, A., Brandt, R., Butcher, S.J., Collinson, L., Gault, D., Grunewald, K., Hecksel, C., Huiskonen, J.T., Iudin, A., Jones, M.L., Korir, P.K., Koster, A.J., Lagerstedt, I., Lawson, C.L., Mastronarde, D., McCormick, M., Parkinson, H., Rosenthal, P.B., Saalfeld, S., Saibil, H.R., Sarntivijai, S., Solanes Valero, I., Subramaniam, S., Swedlow, J.R., Tudose, I., Winn, M. and Kleywegt, G.J., "Building Bridges between Cellular and Molecular Structural Biology" (2017) Elife, 6, 10.7554/eLife.25835.

 

Oudshoorn, D., Rijs, K., Limpens, R., Groen, K., Koster, A.J., Snijder, E.J., Kikkert, M. and Bárcena, M., "Expression and Cleavage of Middle East Respiratory Syndrome Coronavirus NSP3-4 Polyprotein Induce the Formation of Double-Membrane Vesicles That Mimic Those Associated with Coronaviral Rna Replication" (2017) MBio, 8, 6, 10.1128/mBio.01658-17.

 

Melia, C.E., van der Schaar, H.M., Lyoo, H., Limpens, R., Feng, Q., Wahedi, M., Overheul, G.J., van Rij, R.P., Snijder, E.J., Koster, A.J., Bárcena, M. and van Kuppeveld, F.J.M., "Escaping Host Factor PI4KB Inhibition: Enterovirus Genomic RNA Replication in the Absence of Replication Organelles" (2017) Cell Rep, 21, 3, 587-599. 10.1016/j.celrep.2017.09.068.

 

Kryshtafovych, A., Albrecht, R., Basle, A., Bule, P., Caputo, A.T., Carvalho, A.L., Chao, K.L., Diskin, R., Fidelis, K., Fontes, C., Fredslund, F., Gilbert, H.J., Goulding, C.W., Hartmann, M.D., Hayes, C.S., Herzberg, O., Hill, J.C., Joachimiak, A., Kohring, G.W., Koning, R.I., Lo Leggio, L., Mangiagalli, M., Michalska, K., Moult, J., Najmudin, S., Nardini, M., Nardone, V., Ndeh, D., Nguyen, T.H., Pintacuda, G., Postel, S., van Raaij, M.J., Roversi, P., Shimon, A., Singh, A.K., Sundberg, E.J., Tars, K., Zitzmann, N. and Schwede, T., "Target Highlights from the First Post-Psi Casp Experiment (Casp12, May-August 2016)" (2017) Proteins, 10.1002/prot.25392.

 

Forster, F. and Koster, A.J., "Recent Advances in Electron Tomography" (2017) J Struct Biol, 197, 2, 71-72. 10.1016/j.jsb.2016.11.005.

 

Du, G., Hathout, R.M., Nasr, M., Nejadnik, M.R., Tu, J., Koning, R.I., Koster, A.J., Slutter, B., Kros, A., Jiskoot, W., Bouwstra, J.A. and Monkare, J., "Intradermal Vaccination with Hollow Microneedles: A Comparative Study of Various Protein Antigen and Adjuvant Encapsulated Nanoparticles" (2017) J Control Release, 266, 109-118. 10.1016/j.jconrel.2017.09.021.

 

van Elsland. D.M., Bos, E., Pawlak, J.B., Overkleeft, H.S., Koster, A.J. and van Kasteren. S.I., "Correlative Light and Electron Microscopy Reveals Discrepancy between Gold and Fluorescence Labelling" (2017) J Microsc, 267, 3, 309-317. 10.1111/jmi.12567.

 

Basu, K., Lajoie, D., Aumentado-Armstrong, T., Chen, J., Koning, R.I., Bossy, B., Bostina, M., Sik, A., Bossy-Wetzel, E. and Rouiller, I., "Molecular Mechanism of Drp1 Assembly Studied in Vitro by Cryo-Electron Microscopy" (2017) PLoS One, 12, 6, e0179397. 10.1371/journal.pone.0179397.

 

Alewijnse, B., Ashton, A.W., Chambers, M.G., Chen, S., Cheng, A., Ebrahim, M., Eng, E.T., Hagen, W.J.H., Koster, A.J., Lopez, C.S., Lukoyanova, N., Ortega, J., Renault, L., Reyntjens, S., Rice, W.J., Scapin, G., Schrijver, R., Siebert, A., Stagg, S.M., Grum-Tokars, V., Wright, E.R., Wu, S., Yu, Z., Zhou, Z.H., Carragher, B. and Potter, C.S., "Best Practices for Managing Large Cryoem Facilities" (2017) J Struct Biol, 199, 3, 225-236. 10.1016/j.jsb.2017.07.011.

 

2016

 

Yague, P., Willemse, J., Koning, R.I., Rioseras, B., Lopez-Garcia, M.T., Gonzalez-Quinonez, N., Lopez-Iglesias, C., Shliaha, P.V., Rogowska-Wrzesinska, A., Koster, A.J., Jensen, O.N., van Wezel, G.P. and Manteca, A., "Subcompartmentalization by Cross-Membranes During Early Growth of Streptomyces Hyphae" (2016) Nat Commun, 7, 12467. 10.1038/ncomms12467.

 

Vargas, J., Franken, E., Sorzano, C.O., Gomez-Blanco, J., Schoenmakers, R., Koster, A.J. and Carazo, J.M., "Foil-Hole and Data Image Quality Assessment in 3DEM: Towards High-Throughput Image Acquisition in the Electron Microscope" (2016) J Struct Biol, 196, 3, 515-524. 10.1016/j.jsb.2016.10.006.

 

van Elsland, D.M., Bos, E., de Boer, W., Overkleeft, H.S., Koster, A.J. and van Kasteren, S.I., "Detection of Bioorthogonal Groups by Correlative Light and Electron Microscopy Allows Imaging of Degraded Bacteria in Phagocytes" (2016) Chem Sci, 7, 1, 752-758. 10.1039/c5sc02905h.

 

van der Schaar, H.M., Melia, C.E., van Bruggen, J.A., Strating, J.R., van Geenen, M.E., Koster, A.J., Bárcena, M. and van Kuppeveld, F.J., "Illuminating the Sites of Enterovirus Replication in Living Cells by Using a Split-GFP-Tagged Viral Protein" (2016) mSphere, 1, 4, 10.1128/mSphere.00104-16.

 

van der Hoeven, B., Oudshoorn, D., Koster, A.J., Snijder, E.J., Kikkert, M. and Bárcena, M., "Biogenesis and Architecture of Arterivirus Replication Organelles" (2016) Virus Res, 220, 70-90. 10.1016/j.virusres.2016.04.001.

 

Short, K.R., Kasper, J., van der Aa, S., Andeweg, A.C., Zaaraoui-Boutahar, F., Goeijenbier, M., Richard, M., Herold, S., Becker, C., Scott, D.P., Limpens, R.W., Koster, A.J., Bárcena, M., Fouchier, R.A., Kirkpatrick, C.J. and Kuiken, T., "Influenza Virus Damages the Alveolar Barrier by Disrupting Epithelial Cell Tight Junctions" (2016) Eur Respir J, 47, 3, 954-66. 10.1183/13993003.01282-2015.

 

Shishovs, M., Rumnieks, J., Diebolder, C., Jaudzems, K., Andreas, L.B., Stanek, J., Kazaks, A., Kotelovica, S., Akopjana, I., Pintacuda, G., Koning, R.I. and Tars, K., "Structure of AP205 Coat Protein Reveals Circular Permutation in Ssrna Bacteriophages" (2016) J Mol Biol, 428, 21, 4267-4279. 10.1016/j.jmb.2016.08.025.

 

Sharp, T.H., Koster, A.J. and Gros, P., "Heterogeneous Mac Initiator and Pore Structures in a Lipid Bilayer by Phase-Plate Cryo-Electron Tomography" (2016) Cell Rep, 15, 1, 1-8. 10.1016/j.celrep.2016.03.002.

 

Shakeel, S., Westerhuis, B.M., Domanska, A., Koning, R.I., Matadeen, R., Koster, A.J., Bakker, A.Q., Beaumont, T., Wolthers, K.C. and Butcher, S.J., "Multiple Capsid-Stabilizing Interactions Revealed in a High-Resolution Structure of an Emerging Picornavirus Causing Neonatal Sepsis" (2016) Nat Commun, 7, 11387. 10.1038/ncomms11387.

 

Santos, J.M., Duarte, N., Kehrer, J., Ramesar, J., Avramut, M.C., Koster, A.J., Dessens, J.T., Frischknecht, F., Chevalley-Maurel, S., Janse, C.J., Franke-Fayard, B. and Mair, G.R., "Maternally Supplied S-Acyl-Transferase Is Required for Crystalloid Organelle Formation and Transmission of the Malaria Parasite" (2016) Proc Natl Acad Sci U S A, 113, 26, 7183-8. 10.1073/pnas.1522381113.

 

Oudshoorn, D., van der Hoeven, B., Limpens, R.W., Beugeling, C., Snijder, E.J., Bárcena, M. and Kikkert, M., "Antiviral Innate Immune Response Interferes with the Formation of Replication-Associated Membrane Structures Induced by a Positive-Strand RNA Virus" (2016) MBio, 7, 6, 10.1128/mBio.01991-16.

 

Mora, N.L., Bahreman, A., Valkenier, H., Li, H., Sharp, T.H., Sheppard, D.N., Davis, A.P. and Kros, A., "Targeted Anion Transporter Delivery by Coiled-Coil Driven Membrane Fusion" (2016) Chem Sci, 7, 3, 1768-1772. 10.1039/c5sc04282h.

 

Koning, R.I., Gomez-Blanco, J., Akopjana, I., Vargas, J., Kazaks, A., Tars, K., Carazo, J.M. and Koster, A.J., "Asymmetric Cryo-EM Reconstruction of Phage Ms2 Reveals Genome Structure in Situ" (2016) Nat Commun, 7, 12524. 10.1038/ncomms12524.

 

den Reijer, P.M., Haisma, E.M., Lemmens-den Toom, N.A., Willemse, J., Koning, R.I., Demmers, J.A., Dekkers, D.H., Rijkers, E., El Ghalbzouri, A., Nibbering, P.H. and van Wamel, W., "Detection of Alpha-Toxin and Other Virulence Factors in Biofilms of Staphylococcus Aureus on Polystyrene and a Human Epidermal Model" (2016) PLoS One, 11, 1, e0145722. 10.1371/journal.pone.0145722.

 

de Boeck, M., Cui, C., Mulder, A.A., Jost, C.R., Ikeno, S. and Ten Dijke, P., "Smad6 Determines Bmp-Regulated Invasive Behaviour of Breast Cancer Cells in a Zebrafish Xenograft Model" (2016) Sci Rep, 6, 24968. 10.1038/srep24968.

 

Celler, K., Koning, R.I., Willemse, J., Koster, A.J. and van Wezel, G.P., "Cross-Membranes Orchestrate Compartmentalization and Morphogenesis in Streptomyces" (2016) Nat Commun, 7, ncomms11836. 10.1038/ncomms11836.

 

Boels, M.G., Avramut, M.C., Koudijs, A., Dane, M.J., Lee, D.H., van der Vlag, J., Koster, A.J., van Zonneveld, A.J., van Faassen, E., Grone, H.J., van den Berg, B.M. and Rabelink, T.J., "Atrasentan Reduces Albuminuria by Restoring the Glomerular Endothelial Glycocalyx Barrier in Diabetic Nephropathy" (2016) Diabetes, 65, 8, 2429-39. 10.2337/db15-1413.

 

2015

 

Zehner, M., Marschall, A.L., Bos, E., Schloetel, J.G., Kreer, C., Fehrenschild, D., Limmer, A., Ossendorp, F., Lang, T., Koster, A.J., Dubel, S. and Burgdorf, S., "The Translocon Protein Sec61 Mediates Antigen Transport from Endosomes in the Cytosol for Cross-Presentation to Cd8(+) T Cells" (2015) Immunity, 42, 5, 850-63. 10.1016/j.immuni.2015.04.008.

 

Spronken, M.I., Short, K.R., Herfst, S., Bestebroer, T.M., Vaes, V.P., van der Hoeven, B., Koster, A.J., Kremers, G.J., Scott, D.P., Gultyaev, A.P., Sorell, E.M., de Graaf, M., Bárcena, M., Rimmelzwaan, G.F. and Fouchier, R.A., "Optimisations and Challenges Involved in the Creation of Various Bioluminescent and Fluorescent Influenza A Virus Strains for in Vitro and in Vivo Applications" (2015) PLoS One, 10, 8, e0133888. 10.1371/journal.pone.0133888.

 

Spijker, H.S., Song, H., Ellenbroek, J.H., Roefs, M.M., Engelse, M.A., Bos, E., Koster, A.J., Rabelink, T.J., Hansen, B.C., Clark, A., Carlotti, F. and de Koning, E.J., "Loss of Beta-Cell Identity Occurs in Type 2 Diabetes and Is Associated with Islet Amyloid Deposits" (2015) Diabetes, 64, 8, 2928-38. 10.2337/db14-1752.

 

Pronker, M.F., Bos, T.G., Sharp, T.H., Thies-Weesie, D.M. and Janssen, B.J., "Olfactomedin-1 Has a V-Shaped Disulfide-Linked Tetrameric Structure" (2015) J Biol Chem, 290, 24, 15092-101. 10.1074/jbc.M115.653485.

 

Mourik, M.J., Faas, F.G., Zimmermann, H., Voorberg, J., Koster, A.J. and Eikenboom, J., "Content Delivery to Newly Forming Weibel-Palade Bodies Is Facilitated by Multiple Connections with the Golgi Apparatus" (2015) Blood, 125, 22, 3509-16. 10.1182/blood-2014-10-608596.

 

Mourik, M.J., Faas, F.G., Zimmermann, H., Eikenboom, J. and Koster, A.J., "Towards the Imaging of Weibel-Palade Body Biogenesis by Serial Block Face-Scanning Electron Microscopy" (2015) J Microsc, 259, 2, 97-104. 10.1111/jmi.12222.

 

Lin, J.W., Spaccapelo, R., Schwarzer, E., Sajid, M., Annoura, T., Deroost, K., Ravelli, R.B., Aime, E., Capuccini, B., Mommaas-Kienhuis, A.M., O'Toole, T., Prins, F., Franke-Fayard, B.M., Ramesar, J., Chevalley-Maurel, S., Kroeze, H., Koster, A.J., Tanke, H.J., Crisanti, A., Langhorne, J., Arese, P., Van den Steen, P.E., Janse, C.J. and Khan, S.M., "Replication of Plasmodium in Reticulocytes Can Occur without Hemozoin Formation, Resulting in Chloroquine Resistance" (2015) J Exp Med, 212, 6, 893-903. 10.1084/jem.20141731.

 

Diebolder, C.A., Halff, E.F., Koster, A.J., Huizinga, E.G. and Koning, R.I., "Cryoelectron Tomography of the NAIP5/NLRC4 Inflammasome: Implications for NLR Activation" (2015) Structure, 23, 12, 2349-57. 10.1016/j.str.2015.10.001.

 

Diebolder, C.A., Faas, F.G., Koster, A.J. and Koning, R.I., "Conical Fourier Shell Correlation Applied to Electron Tomograms" (2015) J Struct Biol, 190, 2, 215-23. 10.1016/j.jsb.2015.03.010.

 

Burgess, N.C., Sharp, T.H., Thomas, F., Wood, C.W., Thomson, A.R., Zaccai, N.R., Brady, R.L., Serpell, L.C. and Woolfson, D.N., "Modular Design of Self-Assembling Peptide-Based Nanotubes" (2015) J Am Chem Soc, 137, 33, 10554-62. 10.1021/jacs.5b03973.

 

Askes, S.H., Lopez Mora, N., Harkes, R., Koning, R.I., Koster, B., Schmidt, T., Kros, A. and Bonnet, S., "Imaging the Lipid Bilayer of Giant Unilamellar Vesicles Using Red-to-Blue Light Upconversion" (2015) Chem Commun (Camb), 51, 44, 9137-40. 10.1039/c5cc02197a.

 

2014

 

Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJ, van de Winkel JG, Wilson IA, Koster AJ, Taylor RP, Saphire EO, Burton DR, Schuurman J, Gros P, Parren PW. Complement is activated by IgG hexamers assembled at the cell surface. Science. 2014 Mar 14;343(6176):1260-3. doi:10.1126/science.1248943.

 

Mourik, M.J., Faas, F.G., Valentijn, K.M., Valentijn, J.A., Eikenboom, J.C. and Koster, A.J., "Correlative Light Microscopy and Electron Tomography to Study Von Willebrand Factor Exocytosis from Vascular Endothelial Cells" (2014) Methods Cell Biol, 124, 71-92. 10.1016/B978-0-12-801075-4.00004-5.

 

Koster, A.J. and Grunewald, K., "Editorial on Correlative Microscopy" (2014) Ultramicroscopy, 143, 1-2. 10.1016/j.ultramic.2014.03.010.

 

Koning, R.I., Faas, F.G., Boonekamp, M., de Visser, B., Janse, J., Wiegant, J.C., de Breij, A., Willemse, J., Nibbering, P.H., Tanke, H.J. and Koster, A.J., "MAVIS: An Integrated System for Live Microscopy and Vitrification" (2014) Ultramicroscopy, 143, 67-76. 10.1016/j.ultramic.2013.10.007.

 

Koning, R.I., Celler, K., Willemse, J., Bos, E., van Wezel, G.P. and Koster, A.J., "Correlative Cryo-Fluorescence Light Microscopy and Cryo-Electron Tomography of Streptomyces" (2014) Methods Cell Biol, 124, 217-39. 10.1016/B978-0-12-801075-4.00010-0.

 

Dautzenberg, I.J., van den Wollenberg, D.J., van den Hengel, S.K., Limpens, R.W., Bárcena, M., Koster, A.J. and Hoeben, R.C., "Mammalian Orthoreovirus T3D Infects U-118 MG Cell Spheroids Independent of Junction Adhesion Molecule-A" (2014) Gene Ther, 21, 6, 609-17. 10.1038/gt.2014.34.

 

Bos, E., Hussaarts, L., van Weering, J.R., Ellisman, M.H., de Wit, H. and Koster, A.J., "Vitrification of Tokuyasu-Style Immuno-Labelled Sections for Correlative Cryo Light Microscopy and Cryo Electron Tomography" (2014) J Struct Biol, 186, 2, 273-82. 10.1016/j.jsb.2014.03.021.

 

2013

 

Yuana, Y., Koning, R.I., Kuil, M.E., Rensen, P.C., Koster, A.J., Bertina, R.M. and Osanto, S., "Cryo-Electron Microscopy of Extracellular Vesicles in Fresh Plasma" (2013) J Extracell Vesicles, 2, 10.3402/jev.v2i0.21494.

 

Ravelli, R.B., Kalicharan, R.D., Avramut, M.C., Sjollema, K.A., Pronk, J.W., Dijk, F., Koster, A.J., Visser, J.T., Faas, F.G. and Giepmans, B.N., "Destruction of Tissue, Cells and Organelles in Type 1 Diabetic Rats Presented at Macromolecular Resolution" (2013) Sci Rep, 3, 1804. 10.1038/srep01804.

 

Mourik, M.J., Valentijn, J.A., Voorberg, J., Koster, A.J., Valentijn, K.M. and Eikenboom, J., "Von Willebrand Factor Remodeling During Exocytosis from Vascular Endothelial Cells" (2013) J Thromb Haemost, 11, 11, 2009-19. 10.1111/jth.12401.

 

Vulović M, Ravelli RB, van Vliet LJ, Koster AJ, Lazić I, Lücken U, Rullgård H, Öktem O, Rieger B. Image formation modeling in cryo-electron microscopy. J Struct Biol. 2013 Jul;183(1):19-32. doi: 10.1016/j.jsb.2013.05.008. Epub 2013 May 25.

 

Lin, J.W., Meireles, P., Prudencio, M., Engelmann, S., Annoura, T., Sajid, M., Chevalley-Maurel, S., Ramesar, J., Nahar, C., Avramut, C.M., Koster, A.J., Matuschewski, K., Waters, A.P., Janse, C.J., Mair, G.R. and Khan, S.M., "Loss-of-Function Analyses Defines Vital and Redundant Functions of the Plasmodium Rhomboid Protease Family" (2013) Mol Microbiol, 88, 2, 318-38. 10.1111/mmi.12187.

 

Koning, R.I., Kutchoukov, V.G., Hagen, C.W. and Koster, A.J., "Nanofabrication of a Gold Fiducial Array on Specimen Support for Electron Tomography" (2013) Ultramicroscopy, 135, 99-104. 10.1016/j.ultramic.2013.06.015.

 

Koning, R.I. and Koster, A.J., "Cellular Nanoimaging by Cryo Electron Tomography" (2013) Methods Mol Biol, 950, 227-51. 10.1007/978-1-62703-137-0_14.

 

Koning, R.I., de Breij, A., Oostergetel, G.T., Nibbering, P.H., Koster, A.J. and Dijkshoorn, L., "Cryo-Electron Tomography Analysis of Membrane Vesicles from Acinetobacter Baumannii ATCC19606T" (2013) Res Microbiol, 164, 5, 397-405. 10.1016/j.resmic.2013.02.007.

 

Janssens, M., Mulder, A.A., van Smeden, J., Pilgram, G.S., Wolterbeek, R., Lavrijsen, A.P., Koning, R.I., Koster, A.J. and Bouwstra, J.A., "Electron Diffraction Study of Lipids in Non-Lesional Stratum Corneum of Atopic Eczema Patients" (2013) Biochim Biophys Acta, 1828, 8, 1814-21. 10.1016/j.bbamem.2013.04.001.

 

Faas, F.G., Bárcena, M., Agronskaia, A.V., Gerritsen, H.C., Moscicka, K.B., Diebolder, C.A., van Driel, L.F., Limpens, R.W., Bos, E., Ravelli, R.B., Koning, R.I. and Koster, A.J., "Localization of Fluorescently Labeled Structures in Frozen-Hydrated Samples Using Integrated Light Electron Microscopy" (2013) J Struct Biol, 181, 3, 283-90. 10.1016/j.jsb.2012.12.004.

 

de Wilde, A.H., Raj, V.S., Oudshoorn, D., Bestebroer, T.M., van Nieuwkoop, S., Limpens, R.W., Posthuma, C.C., van der Meer, Y., Bárcena, M., Haagmans, B.L., Snijder, E.J. and van den Hoogen, B.G., "Mers-Coronavirus Replication Induces Severe in Vitro Cytopathology and Is Strongly Inhibited by Cyclosporin A or Interferon-Alpha Treatment" (2013) J Gen Virol, 94, Pt 8, 1749-60. 10.1099/vir.0.052910-0.

 

de Vrij J, Maas SL, van Nispen M, Sena-Esteves M, Limpens RW, Koster AJ, Leenstra S, Lamfers ML, Broekman ML. Quantification of nanosized extracellular membrane vesicles with scanning ion occlusion sensing. Nanomedicine (Lond). 2013 Sep;8(9):1443-58. doi: 10.2217/nnm.12.173. 

 

Chin, P.T., van der Linden, M., van Harten, E.J., Barendregt, A., Rood, M.T., Koster, A.J., van Leeuwen, F.W., de Mello Donega, C., Heck, A.J. and Meijerink, A., "Enhanced Luminescence of AG Nanoclusters Via Surface Modification" (2013) Nanotechnology, 24, 7, 075703. 10.1088/0957-4484/24/7/075703.

 

Celler, K., Koning, R.I., Koster, A.J. and van Wezel, G.P., "Multidimensional View of the Bacterial Cytoskeleton" (2013) J Bacteriol, 195, 8, 1627-36. 10.1128/JB.02194-12.

 

2012

 

van der Laan, A.M., van Gemert, A.M., Dirks, R.W., Noordermeer, J.N., Fradkin, L.G., Tanke, H.J. and Jost, C.R., "Mrna Cycles through Hypoxia-Induced Stress Granules in Live Drosophila Embryonic Muscles" (2012) Int J Dev Biol, 56, 9, 701-9. 10.1387/ijdb.103172al.

 

van de Giessen, M., van der Laan, A., Hendriks, E.A., Vidorreta, M., Reiber, J.H., Jost, C.R., Tanke, H.J. and Lelieveldt, B.P., "Fully Automated Attenuation Measurement and Motion Correction in Flip Image Sequences" (2012) IEEE Trans Med Imaging, 31, 2, 461-73. 10.1109/TMI.2011.2171497.

 

Liu, Z., Galli, F., Waterreus, W.J., Meulenbroek, E., Koning, R.I., Lamers, G.E., Olsthoorn, R.C., Pannu, N., Oosterkamp, T.H., Koster, A.J., Dame, R.T. and Abrahams, J.P., "Single-Walled Carbon Nanotubes as Scaffolds to Concentrate DNA for the Study of DNA-Protein Interactions" (2012) Chemphyschem, 13, 6, 1569-75. 10.1002/cphc.201100896.

 

Knoops, K., Bárcena, M., Limpens, R.W., Koster, A.J., Mommaas, A.M. and Snijder, E.J., "Ultrastructural Characterization of Arterivirus Replication Structures: Reshaping the Endoplasmic Reticulum to Accommodate Viral RNA Synthesis" (2012) J Virol, 86, 5, 2474-87. 10.1128/JVI.06677-11.

 

Faas, F.G., Avramut, M.C., van den Berg, B.M., Mommaas, A.M., Koster, A.J. and Ravelli, R.B., "Virtual Nanoscopy: Generation of Ultra-Large High-Resolution Electron Microscopy Maps" (2012) J Cell Biol, 198, 3, 457-69. 10.1083/jcb.201201140.

 

Diebolder, C.A., Koster, A.J. and Koning, R.I., "Pushing the Resolution Limits in Cryo Electron Tomography of Biological Structures" (2012) J Microsc, 248, 1, 1-5. 10.1111/j.1365-2818.2012.03627.x.

 

Bahreman, A., Limburg, B., Siegler, M.A., Koning, R., Koster, A.J. and Bonnet, S., "Ruthenium Polypyridyl Complexes Hopping at Anionic Lipid Bilayers through a Supramolecular Bond Sensitive to Visible Light" (2012) Chemistry, 18, 33, 10271-80. 10.1002/chem.201200624.

 

2011

 

Wiweger, M.I., Avramut, C.M., de Andrea, C.E., Prins, F.A., Koster, A.J., Ravelli, R.B. and Hogendoorn, P.C., "Cartilage Ultrastructure in Proteoglycan-Deficient Zebrafish Mutants Brings to Light New Candidate Genes for Human Skeletal Disorders" (2011) J Pathol, 223, 4, 531-42. 10.1002/path.2824.

 

Wang, J.W., Valentijn, K.M., de Boer, H.C., Dirven, R.J., van Zonneveld, A.J., Koster, A.J., Voorberg, J., Reitsma, P.H. and Eikenboom, J., "Intracellular Storage and Regulated Secretion of Von Willebrand Factor in Quantitative Von Willebrand Disease" (2011) J Biol Chem, 286, 27, 24180-8. 10.1074/jbc.M110.215194.

 

Limpens, R.W., van der Schaar, H.M., Kumar, D., Koster, A.J., Snijder, E.J., van Kuppeveld, F.J. and Bárcena, M., "The Transformation of Enterovirus Replication Structures: A Three-Dimensional Study of Single- and Double-Membrane Compartments" (2011) MBio, 2, 5, 10.1128/mBio.00166-11.

 

Ilett, E.J., Bárcena, M., Errington-Mais, F., Griffin, S., Harrington, K.J., Pandha, H.S., Coffey, M., Selby, P.J., Limpens, R.W.A.L., Mommaas, M., Hoeben, R.C., Vile, R.G., Melcher, A.A.,” Internalization of oncolytic reovirus by human dendritic cell carriers protects the virus from neutralization” (2011) Clin Cancer Res, 17, 9, 2767-76. DOI: 10.1158/1078-0432.CCR-10-3266.

 

Karuppasamy, M., Karimi Nejadasl, F., Vulovic, M., Koster, A.J. and Ravelli, R.B., "Radiation Damage in Single-Particle Cryo-Electron Microscopy: Effects of Dose and Dose Rate" (2011) J Synchrotron Radiat, 18, Pt 3, 398-412. 10.1107/S090904951100820X.

 

Karimi Nejadasl, F., Karuppasamy, M., Koster, A.J. and Ravelli, R.B., "Defocus Estimation from Stroboscopic Cryo-Electron Microscopy Data" (2011) Ultramicroscopy, 111, 11, 1592-8. 10.1016/j.ultramic.2011.08.007.

 

de Vrij, J., van den Hengel, S.K., Uil, T.G., Koppers-Lalic, D., Dautzenberg, I.J., Stassen, O.M., Bárcena, M., Yamamoto, M., de Ridder, C.M., Kraaij, R., Kwappenberg, K.M., Schilham, M.W. and Hoeben, R.C., "Enhanced Transduction of Car-Negative Cells by Protein IX-Gene Deleted Adenovirus 5 Vectors" (2011) Virology, 410, 1, 192-200. 10.1016/j.virol.2010.10.040.

 

2010

 

Vulovic, M., Rieger, B., van Vliet, L.J., Koster, A.J. and Ravelli, R.B., "A Toolkit for the Characterization of Ccd Cameras for Transmission Electron Microscopy" (2010) Acta Crystallogr D Biol Crystallogr, 66, Pt 1, 97-109. 10.1107/S0907444909031205.

 

Valentijn, K.M., van Driel, L.F., Mourik, M.J., Hendriks, G.J., Arends, T.J., Koster, A.J. and Valentijn, J.A., "Multigranular Exocytosis of Weibel-Palade Bodies in Vascular Endothelial Cells" (2010) Blood, 116, 10, 1807-16. 10.1182/blood-2010-03-274209.

 

Briegel A, Chen S, Koster AJ, Plitzko JM, Schwartz CL, Jensen GJ. Correlated light and electron cryo-microscopy. Methods Enzymol. 2010;481:317-41. doi:10.1016/S0076-6879(10)81013-4

 

Janssen BJ, Gomes L, Koning RI, Svergun DI, Koster AJ, Fritzinger DC, Vogel CW, Gros P. Insights into complement convertase formation based on the structure of the factor B-cobra venom factor complex. EMBO J. 2009 Aug 19;28(16):2469-78. doi: 10.1038/emboj.2009.184. Epub 2009 Jul 2.

 

Koning, R.I., "Cryo-Electron Tomography of Cellular Microtubules" (2010) Methods Cell Biol, 97, 455-73. 10.1016/S0091-679X(10)97024-6.

 

Knoops, K., Swett-Tapia, C., van den Worm, S.H., Te Velthuis, A.J., Koster, A.J., Mommaas, A.M., Snijder, E.J. and Kikkert, M., "Integrity of the Early Secretory Pathway Promotes, but Is Not Required for, Severe Acute Respiratory Syndrome Coronavirus Rna Synthesis and Virus-Induced Remodeling of Endoplasmic Reticulum Membranes" (2010) J Virol, 84, 2, 833-46. 10.1128/JVI.01826-09.

2009

 

Versluis, F., Tomatsu, I., Kehr, S., Fregonese, C., Tepper, A.W., Stuart, M.C., Ravoo, B.J., Koning, R.I. and Kros, A., "Shape and Release Control of a Peptide Decorated Vesicle through Ph Sensitive Orthogonal Supramolecular Interactions" (2009) J Am Chem Soc, 131, 37, 13186-7. 10.1021/ja9026264.

 

van Gemert, A.M., van der Laan, A.M., Pilgram, G.S., Fradkin, L.G., Noordermeer, J.N., Tanke, H.J. and Jost, C.R., "In Vivo Monitoring of mRNA Movement in Drosophila Body Wall Muscle Cells Reveals the Presence of Myofiber Domains" (2009) PLoS One, 4, 8, e6663. 10.1371/journal.pone.0006663.

 

van Driel, L.F., Valentijn, J.A., Valentijn, K.M., Koning, R.I. and Koster, A.J., "Tools for Correlative Cryo-Fluorescence Microscopy and Cryo-Electron Tomography Applied to Whole Mitochondria in Human Endothelial Cells" (2009) Eur J Cell Biol, 88, 11, 669-84. 10.1016/j.ejcb.2009.07.002.

 

Koning, R.I. and Koster, A.J., "Cryo-Electron Tomography in Biology and Medicine" (2009) Ann Anat, 191, 5, 427-45. 10.1016/j.aanat.2009.04.003.

 

Asp, L., Kartberg, F., Fernandez-Rodriguez, J., Smedh, M., Elsner, M., Laporte, F., Bárcena, M., Jansen ,K.A., Valentijn, J.A., Koster, A.J., Bergeron, J.J., Nilsson, T., “Early stages of Golgi vesicle and tubule formation require diacylglycerol” (2009) Mol Biol Cell 20, 3, 780-90. DOI: 10.1091/mbc.E08-03-0256.

 

Jiang, L., Schaffitzel, C., Bingel-Erlenmeyer, R., Ban, N., Korber, P., Koning, R.I., de Geus, D.C., Plaisier, J.R. and Abrahams, J.P., "Recycling of Aborted Ribosomal 50s Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15" (2009) J Mol Biol, 386, 5, 1357-67. 10.1016/j.jmb.2008.10.079.

 

Barcena, M., Oostergetel, G.T., Bartelink, W., Faas, F.G., Verkleij, A., Rottier, P.J., Koster, A.J. and Bosch, B.J., "Cryo-Electron Tomography of Mouse Hepatitis Virus: Insights into the Structure of the Coronavirion" (2009) Proc Natl Acad Sci U S A, 106, 2, 582-7. 10.1073/pnas.0805270106.

 

Barcena, M. and Koster, A.J., "Electron Tomography in Life Science" (2009) Semin Cell Dev Biol, 20, 8, 920-30. 10.1016/j.semcdb.2009.07.008.

 

2008

 

Zovko, S., Abrahams, J.P., Koster, A.J., Galjart, N. and Mommaas, A.M., "Microtubule Plus-End Conformations and Dynamics in the Periphery of Interphase Mouse Fibroblasts" (2008) Mol Biol Cell, 19, 7, 3138-46. 10.1091/mbc.E07-07-0681.

 

Agronskaia AV, Valentijn JA, van Driel LF, Schneijdenberg CT, Humbel BM, van Bergen en Henegouwen PM, Verkleij AJ, Koster AJ, Gerritsen HC. Integrated fluorescence and transmission electron microscopy. J Struct Biol. 2008
Nov;164(2):183-9. doi: 10.1016/j.jsb.2008.07.003. Epub 2008 Jul 11. 

 

van Driel, L.F., Knoops, K., Koster, A.J. and Valentijn, J.A., "Fluorescent Labeling of Resin-Embedded Sections for Correlative Electron Microscopy Using Tomography-Based Contrast Enhancement" (2008) J Struct Biol, 161, 3, 372-83. 10.1016/j.jsb.2007.09.021.

 

Valentijn, K.M., Valentijn, J.A., Jansen, K.A. and Koster, A.J., "A New Look at Weibel-Palade Body Structure in Endothelial Cells Using Electron Tomography" (2008) J Struct Biol, 161, 3, 447-58. 10.1016/j.jsb.2007.08.001.

 

Raz, V., Vermolen, B.J., Garini, Y., Onderwater, J.J., Mommaas-Kienhuis, M.A., Koster, A.J., Young, I.T., Tanke, H. and Dirks, R.W., "The Nuclear Lamina Promotes Telomere Aggregation and Centromere Peripheral Localization During Senescence of Human Mesenchymal Stem Cells" (2008) J Cell Sci, 121, Pt 24, 4018-28. 10.1242/jcs.034876.

 

Koning, R.I., Zovko, S., Bárcena, M., Oostergetel, G.T., Koerten, H.K., Galjart, N., Koster, A.J. and Mieke Mommaas, A., "Cryo Electron Tomography of Vitrified Fibroblasts: Microtubule Plus Ends in Situ" (2008) J Struct Biol, 161, 3, 459-68. 10.1016/j.jsb.2007.08.011.

 

Knoops, K., Kikkert, M., Worm, S.H., Zevenhoven-Dobbe, J.C., van der Meer, Y., Koster, A.J., Mommaas, A.M. and Snijder, E.J., "Sars-Coronavirus Replication Is Supported by a Reticulovesicular Network of Modified Endoplasmic Reticulum" (2008) PLoS Biol, 6, 9, e226. 10.1371/journal.pbio.0060226.

 

2007

 

Valentijn, J.A., van Weeren, L., Ultee, A. and Koster, A.J., "Novel Localization of Rab3d in Rat Intestinal Goblet Cells and Brunner's Gland Acinar Cells Suggests a Role in Early Golgi Trafficking" (2007) Am J Physiol Gastrointest Liver Physiol, 293, 1, G165-77. 10.1152/ajpgi.00520.2006.

 

de Vries, F.A., Zonneveld, J.B., de Groot, A.J., Koning, R.I., van Zeeland, A.A. and Pastink, A., "Schizosaccharomyces Pombe Rad22a and Rad22b Have Similar Biochemical Properties and Form Multimeric Structures" (2007) Mutat Res, 615, 1-2, 143-52. 10.1016/j.mrfmmm.2006.11.032.

 

2006

 

Schaffitzel, C., Oswald, M., Berger, I., Ishikawa T., Abrahams J.P., Koerten H.K., Koning R.I., Ban N. “Structure of the E. coli signal recognition particle bound to a translating ribosome.” (2006) Nature 444, 7118, 503-6. 10.1038/nature05182

van den Worm, S.H., Koning, R.I., Warmenhoven, H.J., Koerten, H.K. and van Duin, J., "Cryo Electron Microscopy Reconstructions of the Leviviridae Unveil the Densest Icosahedral Rna Packing Possible" (2006) J Mol Biol, 363, 4, 858-65. 10.1016/j.jmb.2006.08.053.

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